Pumpkin Cheesecake Muffins Recipe
Imagine the warm aromas of pumpkin and cinnamon drifting through your kitchen, inviting everyone to gather round—these Pumpkin Cheesecake Muffins are the perfect treat to welcome fall or brighten any day. They’re delightfully moist, spiced just right, and each bite holds a luscious cheesecake surprise in the center. Whether you’re serving them for breakfast, a snack, or a cozy dessert, these muffins bring a touch of bakery magic to your home. Trust me, after one taste, you’ll want Pumpkin Cheesecake Muffins in your regular rotation!

Ingredients You’ll Need
The beauty of Pumpkin Cheesecake Muffins is how each ingredient plays an essential role, crafting that perfectly moist crumb and decadent creamy swirl. With a handful of everyday staples and a few flavorful touches, every element works together to elevate these muffins into something truly special.
- All-purpose flour: Gives the muffins their tender structure without being too dense.
- Sugar: Sweetens both the pumpkin and cheesecake layers just right.
- Baking powder: Ensures a beautiful rise and a fluffy muffin texture.
- Baking soda: Works alongside the baking powder for lift and a soft crumb.
- Cinnamon: Brings warm, spicy notes that complement the pumpkin brilliantly.
- Nutmeg: Adds an earthy depth, making the spice blend irresistible.
- Salt: Enhances every flavor and keeps the muffins from tasting flat.
- Vegetable oil: Keeps things super moist without overwhelming the other flavors.
- Eggs: Hold the muffins together and make the crumb tender and rich.
- Pumpkin puree: Gives gorgeous color, moisture, and that autumnal flavor we crave.
- Vanilla extract: Rounds out sweet flavors in both the batter and the creamy filling.
- Cream cheese (softened): The dreamy heart of the cheesecake swirl—make sure it’s room temp for easy blending.
- Sugar (for filling): Sweetens the cheesecake layer for a dessert-like center.
- Egg (for filling): Binds the cream cheese mixture, making it smooth and rich.
- Vanilla extract (for filling): Adds a hit of warmth and rounds out the tanginess of the cream cheese.
How to Make Pumpkin Cheesecake Muffins
Step 1: Preheat Your Oven
Start by heating your oven to 350°F (175°C). This ensures even baking from the very start. Don’t forget to line your muffin tin with paper liners or a light spritz of nonstick spray—this makes removing the muffins a breeze and gives them that perfect bakery look.
Step 2: Prepare the Muffin Batter
In a medium bowl, whisk together the flour, sugar, baking powder, baking soda, cinnamon, nutmeg, and salt. This step helps evenly distribute all the leaveners and spices, promising each muffin is bursting with balanced flavor. In a separate, larger bowl, combine the vegetable oil, eggs, pumpkin puree, and vanilla extract. Now, gently fold the dry ingredients into the wet mixture until just combined. A few streaks are fine—over-mixing is the enemy of tender muffins!
Step 3: Make the Cheesecake Filling
Grab another bowl and beat together the softened cream cheese, sugar, egg, and vanilla until the mixture is super smooth and creamy. This luscious filling will bake up into a soft, sweet center that’s absolute heaven next to the spiced pumpkin batter.
Step 4: Assemble the Muffins
Spoon pumpkin batter into each prepared muffin liner, filling them just halfway. Next, drop in a generous spoonful of the cheesecake filling—don’t be shy here, that’s the magic! Top each with more pumpkin batter until the liners are about three-quarters full. You’ll love seeing little peaks of the filling peeking through.
Step 5: Bake to Perfection
Slide the muffin tin into your preheated oven and bake for 20 to 25 minutes. The tops should be lightly golden and a toothpick inserted into the muffin (avoiding the cheesecake center) should come out clean. Let your Pumpkin Cheesecake Muffins cool in the pan for about 5 minutes, then transfer them to a wire rack so the centers set up perfectly. The hardest part is waiting to dig in!
How to Serve Pumpkin Cheesecake Muffins

Garnishes
A little topping goes a long way! Try dusting your Pumpkin Cheesecake Muffins with powdered sugar for a pretty finish, or add a sprinkle of cinnamon on top while they’re still warm. For a touch of crunch, a few toasted pecans or pumpkin seeds are always welcome.
Side Dishes
These muffins are wonderful with a creamy latte, a glass of cold milk, or a mug of hot spiced tea. For brunch, pair them with fresh fruit, yogurt, or a hearty egg scramble to balance the sweet with a little savory.
Creative Ways to Present
If you’re entertaining, arrange your Pumpkin Cheesecake Muffins on a tiered cake stand surrounded by mini pumpkins and colorful leaves for a stunning fall centerpiece. Individually wrapping them in parchment and twine adds a homemade touch, perfect for gifting or bake sales.
Make Ahead and Storage
Storing Leftovers
Leftover Pumpkin Cheesecake Muffins keep beautifully! Once cooled completely, store them in an airtight container in the refrigerator for up to five days. This helps maintain the creamy cheesecake center and keeps the muffins moist as ever.
Freezing
These muffins freeze like a dream. Pop them in a freezer-safe bag or airtight container, and they’ll last for up to three months. For best results, wrap each muffin individually in plastic wrap before freezing to lock in freshness and prevent freezer burn.
Reheating
When you’re ready for a muffin fix, just unwrap and microwave a Pumpkin Cheesecake Muffin for about 20 seconds. If you prefer, you can reheat them in a 300°F oven for 5 to 10 minutes to bring back that fresh-baked feel—your kitchen will smell heavenly all over again!
FAQs
Can I use homemade pumpkin puree?
Absolutely! Homemade pumpkin puree adds a lovely freshness and natural flavor to your Pumpkin Cheesecake Muffins. Just be sure to drain any excess moisture from the puree, as homemade versions can be a bit wetter than store-bought.
What’s the best way to get a smooth cheesecake filling?
Make sure your cream cheese is very soft before mixing; cold cream cheese tends to clump. Beat all the filling ingredients together thoroughly, scraping the bowl as needed, to ensure a silky, lump-free swirl in every muffin.
Can I make these muffins gluten-free?
Yes, just substitute a good-quality 1:1 gluten-free baking flour for the all-purpose flour. The texture stays beautifully tender, and all the pumpkin-spice magic remains intact!
How do I know when the muffins are fully baked?
They’re ready when the tops look set and a toothpick inserted into the side (not the creamy center) comes out clean or with just a few crumbs attached. If the centers jiggle, give them another minute or two in the oven.
Can I add mix-ins like chocolate chips or nuts?
Definitely! Feel free to stir in a handful of mini chocolate chips, chopped pecans, or walnuts into the pumpkin batter before assembling. They lend extra texture and a pop of surprise in each bite.
Final Thoughts
If you’re looking for a crowd-pleasing treat that’s as fun to bake as it is to eat, you simply have to try these Pumpkin Cheesecake Muffins. They’re impressive, comforting, and bursting with flavor—perfect for sharing, gifting, or secretly saving for yourself. Happy baking!
PrintPumpkin Cheesecake Muffins Recipe
Pumpkin Cheesecake Muffins are a delightful fall treat that combines the flavors of pumpkin pie with creamy cheesecake in a handheld form. These moist and flavorful muffins are perfect for breakfast, brunch, or as a sweet snack.
- Prep Time: 15 minutes
- Cook Time: 20-25 minutes
- Total Time: 40 minutes
- Yield: 12 muffins 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Muffin Batter:
- 1 ½ cups all-purpose flour
- 1 cup sugar
- 1 tsp baking powder
- ½ tsp baking soda
- 1 tsp cinnamon
- ½ tsp nutmeg
- ½ tsp salt
- ½ cup vegetable oil
- 2 eggs
- 1 cup pumpkin puree
- 1 tsp vanilla extract
Cheesecake Filling:
- 8 oz cream cheese, softened
- ¼ cup sugar
- 1 egg
- 1 tsp vanilla extract
Instructions
- Preheat Your Oven: Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners.
- Prepare the Muffin Batter: In a medium bowl, whisk together the flour, sugar, baking powder, baking soda, cinnamon, nutmeg, and salt. In a large bowl, mix the vegetable oil, eggs, pumpkin puree, and vanilla. Fold in the dry ingredients until just combined.
- Make the Cheesecake Filling: In another bowl, beat the cream cheese, sugar, egg, and vanilla until smooth.
- Assemble the Muffins: Fill each muffin liner halfway with pumpkin batter. Add a spoonful of cheesecake filling and top with more pumpkin batter until liners are ¾ full.
- Bake to Perfection: Bake for 20-25 minutes or until a toothpick comes out clean. Let cool for 5 minutes before transferring to a wire rack.
Nutrition
- Serving Size: 1 muffin
- Calories: 290
- Sugar: 20g
- Sodium: 240mg
- Fat: 16g
- Saturated Fat: 7g
- Unsaturated Fat: 8g
- Trans Fat: 0g
- Carbohydrates: 32g
- Fiber: 1g
- Protein: 4g
- Cholesterol: 65mg
Keywords: Pumpkin Cheesecake Muffins, Pumpkin Muffins, Cheesecake Muffins, Fall Baking, Pumpkin Recipes